A COMBINED APPROACH OF MULTIPLE CORRESPONDENCE ANALYSIS AND HIERARCHICAL CLUSTER ANALYSIS FOR PROFILING RELATIONSHIPS AMONG CATEGORICAL RISK PREDICTORS: A BLUETONGUE CASE STUDY

Authors

  • Iman E. El-Araby Department of Animal Wealth Development, Faculty of veterinary medicine, Zagazig University, 44511, Egypt
  • Sherif A. Moawed Department of Animal Wealth Development, Faculty of veterinary medicine, Suez Canal University, 41522, Egypt
  • Fardos A. M. Hassan Department of Animal Wealth Development, Faculty of veterinary medicine, Zagazig University, 44511, Egypt
  • Hagar F. Gouda Department of Animal Wealth Development, Faculty of veterinary medicine, Zagazig University, 44511, Egypt

DOI:

https://doi.org/10.26873/SVR-1608-2022

Keywords:

categorical data, multiple correspondence, inertia, factominR, hierarchical cluster

Abstract

Bluetongue (BT) is a non-contagious virus in the Reoviridae family that infects both wild and domestic animals. It causes economic losses and reduces infected animals' production and reproduction. A total of 233 apparently healthy animals were screened for BT. Profiles of health condition of animals were identified using multiple correspondence analysis (MCA) and hierarchical cluster analysis (HCA), and the impact of the change in disease condition of animals was explored by examining the subjective evaluation of the impact of risk factors like (age, sex, season, species, and locality) with regard to BT disease providing an insight into a dataset through information visualization and it presents a useful application for visualizing associations amongst variable categories. The first two MCA dimensions retained up to 27% of the total inertia contained in the data. The positive BT results, summer, and old animals categories were loaded in the first dimension, while negative cases, Al-mounfia and winter categories were related to the second dimension. HCA identified three clusters. Cluster 1 was characterized by frequent and largely exclusive seronegative BT animals 91.67 % of animals in the cluster were seronegative, negative BTV category is the most important and related to cluster 1 with positive v-test=8.75.  Cluster 3 can named a cluster of seropositive BT, up to 88% of cases were seropositive. We can conclude that seropositive BT is associated with summer and old age categories, whereas seronegative BT is associated with young age and winter categories, and thus MCA and HCA provide convenient and easy-to-interpret analytical tools for assessing categorical data relationships.

References

● 1. Bouwknegt C, van Rijn PA, Schipper JJ, Hölzel D, Boonstra J, Nijhof AM, et al. Potential role of ticks as vectors of bluetongue virus. 2010;52(2):183–92.

● 2. Wilson AJ, Mellor PSJPTotRSBBS. Bluetongue in Europe: past, present and future. 2009;364(1530):2669–81.

● 3. Breard E, Hamblin C, Hammoumi S, Sailleau C, Dauphin G, Zientara SJRiVS. The epidemiology and diagnosis of bluetongue with particular reference to Corsica. 2004;77(1):1–8.

● 4. Nagpaul P. Guide to advanced data analysis using IDAMS software. New Delhi: United Nations Educational, Scientific and Cultural Organization. 1999.

● 5. Ayele D, Zewotir T, Mwambi H. Multiple correspondence analysis as a tool for analysis of large health surveys in African settings. Afr Health Sci. 2014;14(4):1036–45.

● 6. Dungey M, Doko Tchatoka F, Yanotti MB. Using multiple correspondence analysis for finance: A tool for assessing financial inclusion. International Review of Financial Analysis. 2018;59:212–22.

● 7. Nguyen HH. Clustering categorical data using community detection techniques. Comput Intell Neurosci. 2017;2017.

● 8. Gevorgyan RA, Hakobyan YB. A matching based clustering algorithm for categorical data. arXiv preprint arXiv:181203469. 2018.

● 9. Abdi H, Valentin D. Multiple Correspondence Analysis. Encyclopedia of Measurement and Statistics. 2007.

● 10. Rodriguez-Sabate C, Morales I, Sanchez A, Rodriguez M. The Multiple Correspondence Analysis Method and Brain Functional Connectivity: Its Application to the Study of the Non-linear Relationships of Motor Cortex and Basal Ganglia. Frontiers in neuroscience. 2017;11(345):1–18.

● 11. Clausen SE. Applied correspondence analysis: An introduction: Sage; 1998.

● 12. Jain AK, Murty MN, Flynn PJ. Data clustering: a review. ACM computing surveys (CSUR). 1999;31(3):264–323.

● 13. Jain AK, Dubes RC. Algorithms for clustering data: Prentice-Hall, Inc.; 1988.

● 14. StataCorp L. Stata multivariate statistics: reference manual. 17 ed: Stata Press Publication; 2021.

● 15. Ward Jr JH. Hierarchical grouping to optimize an objective function. Journal of the American statistical association. 1963;58(301):236–44.

● 16. RStudio Team: integrated development for R. RStudio. Inc, Boston, MA. 2019.

● 17. R Core Team. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria; 2021. Available from: https://www.R-project.org/.

● 18. Malek SS, Abou EL-wafa SAJKVMJ. High seroprevalence of bluetongue in sheep, goats and cattle in assiut governorate, EGYPT. 2016;14(1):285–96.

● 19. Radostits OM, Gay C, Hinchcliff KW, Constable PD. Veterinary Medicine E-Book: A textbook of the diseases of cattle, horses, sheep, pigs and goats: Elsevier Health Sciences; 2006.

● 20. Najarnezhad V, Rajae M. Seroepidemiology of bluetongue disease in small ruminants of north-east of Iran. Asian Pac J Trop Biomed. 2013;3(6):492–5.

● 21. Mozaffari AA, Khalili MJAPJoTB. The first survey for antibody against bluetongue virus in sheep flocks in southeast of Iran. 2012;2(3):S1808–10.

● 22. Mahmoud M, Khafagi MH. Seroprevalence of bluetongue in sheep and goats in Egypt. Veterinary world. 2014;7(4).

Published

2023-02-26

How to Cite

El-Araby, I. E., Moawed, S. A., Hassan, F. A. M., & Gouda, H. F. (2023). A COMBINED APPROACH OF MULTIPLE CORRESPONDENCE ANALYSIS AND HIERARCHICAL CLUSTER ANALYSIS FOR PROFILING RELATIONSHIPS AMONG CATEGORICAL RISK PREDICTORS: A BLUETONGUE CASE STUDY. SLOVENIAN VETERINARY RESEARCH, 60(25-Suppl). https://doi.org/10.26873/SVR-1608-2022

Issue

Section

Veterinary Medicine and The One Health Concept